Xml For Catalogers

Introduction The goal of this book is to introduce XML to a bioinformatics audience. It does so by introducing the fundamentals of XML, Document Type De?nitions (DTDs), XML Namespaces, XML Schema, and XML parsing, and illustrating these concepts with speci?c bioinformatics case studies. The book does not assume any previous knowledge of XML and is geared toward those who want a solid introduction to fundamental XML concepts. The book is divided into nine chapters: Chapter 1: Introduction to XML for Bioinformatics. This chapter provides an introduction to XML and describes the use of XML in biological data exchange. A bird’s-eye view of our ?rst case study, the Distributed Annotation System (DAS), is provided and we examine a sample DAS XML document. The chapter concludes with a discussion of the pros and cons of using XML in bioinformatic applications. Chapter 2: Fundamentals of XML and BSML. This chapter introduces the fundamental concepts of XML and the Bioinformatic Sequence Markup Language (BSML). We explore the origins of XML, de?ne basic rules for XML document structure, and introduce XML Na- spaces. We also explore several sample BSML documents and visualize these documents in the TM Rescentris Genomic Workspace Viewer.

Web-maven Elizabeth Castro, who has penned Peachpit books on HTML,Perl and CGI, and Netscape, now tackles XML–an indispensable tool for creating personalized, updated content for each visitor on your site. Whether you build Web pages for a living or you're taking on anew hobby, XML for the World Wide Web contains everything you need to create dynamic Web sites by writing XML code, developing custom XML applications with DTDs and schemas, transforming XML into personalized Web content through XSLT-based transformations, and professionally formatting XML documents with Cascading Style Sheets.