Autocad Coarse Traning

Editors: Muntean, Adrian, Rademacher, Jens, Zagaris, Antonios (Eds.)
Latest research on Macroscopic and Large Scale Phenomena such as Coarse Graining, Mean Field Limits and Ergodicity
Offspring of the summer school “Macroscopic and large scale phenomena: coarse graining, mean field limits and ergodicity”, which was held in 2012 at the University of Twente, the Netherlands
Focusing on the modeling, multiscale analysis and continuum limits of particle systems

This thesis presents a novel coarse-grained model of DNA, in which bases are represented as rigid nucleotides. The model is shown to quantitatively reproduce many phenomena, including elastic properties of the double-stranded state, hairpin formation in single strands and hybridization of pairs of strands to form duplexes, the first time such a wide range of properties has been captured by a coarse-grained model. The scope and potential of the model is demonstrated by simulating DNA tweezers, an iconic nanodevice, and a two-footed DNA walker — the first time that coarse-grained modelling has been applied to dynamic DNA nanotechnology.

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